ISOLATION AND CHARACTERIZATION OF BACTERIAL COMMUNITY IN ROOT OF CHILI PLANT AS POTENTIAL PLANT GROWTH-PROMOTING BACTERIA

Authors

  • Nur `Azamiyah Ab Rani School of Biology, Faculty of Applied Sciences, Universiti Teknologi MARA Cawangan Negeri Sembilan, Kampus Kuala Pilah, 72000 Kuala Pilah, Negeri Sembilan, Malaysia
  • Aslizah Mohd-Aris School of Biology, Faculty of Applied Sciences, Universiti Teknologi MARA Cawangan Negeri Sembilan, Kampus Kuala Pilah, 72000 Kuala Pilah, Negeri Sembilan, Malaysia

Keywords:

Plant growth-promoting bacteria (PGPB), root of chili plant, morphology characterization, biochemical analysis

Abstract

Agricultural sector is a significant contribution to the growth of Malaysia's economic sector, and its sustainability should be maintained. Dependency on the application of synthetic chemical fertilizers and pesticides required special attention due to their negative effect on extensive usage. Attention to the search for alternative strategies is urgently needed. The plant growth-promoting bacteria (PGPB) showed great potential as biofertilizers and biocontrol of pathogens. This research aims to isolate and identify the potential PGPB from the local chili plant's roots. Isolation and characterization of the potential isolates of PGPB were performed using standard microbiology procedures. A total of 10 isolates were successfully obtained during the isolation stage. The isolates were designated as strain A1 to strain A10. Based on Gram staining, strains A1, A5, A6, A8, A9, and A10 were found to be Gram-positive. Strains A2, A3, and A4 were found to be Gram-negative. However, strain A7 was not able to be retrieved after a series of restreaking procedures, perhaps due to symbiosis factors. Besides, strains A5 and A10 were found to be unmatched by any PGPB strains. Further biochemical analysis proposed that strains A1, A3, A6, and A8 belong to Bacillus sp., strains A2 and A4 belong to Pseudomonas sp., and strain A9 proposed to be Brevibacillus sp. In conclusion, it was strongly suggested that these nine isolates belong to PGPB due to the strain identification resembling a common PGPB strain. In the future, studies on the ability of the isolates to act as bioprotectants and biofertilizers are recommended.

References

Abdallah, D., Frikha-Gargouri, O., & Tounsi, S. (2018). Rizhospheric competence, plant growth promotion, and biocontrol efficacy of Bacillus amyloliquefaciens subsp. plantarum strain 32a. Biological Control, 124, 61–67. https://doi.org/10.1016/j.biocontrol.2018.01.013

Agbodjato, N. A., Noumavo, P. A., Baba-Moussa, F., Salami, H. A., Sina, H., Sèzan, A., Bankolé, H., Adjanohoun, A., & Baba-Moussa, L. (2015). Characterization of potential plant growth promoting rhizobacteria isolated from maize (Zea mays L.) in Central and Northern Benin (West Africa). Applied and Environmental Soil Science, 2015, 1–9. https://doi.org/10.1155/2015/901656

Ali Siddiqui, I., & Ehteshamul-Haque, S. (2001). Suppression of the root rot–root knot disease complex by Pseudomonas aeruginosa in tomato: The influence of inoculum density, nematode populations, moisture, and other plant-associated bacteria. Plant and Soil, 237(1), 81–89. https://doi.org/10.1023/a:1013313103032

Ambrosini, A., & Passaglia, L. M. P. (2017). Plant Growth–Promoting Bacteria (PGPB): Isolation and screening of PGP activities. Current Protocols in Plant Biology, 2(3), 190–209. https://doi.org/10.1002/pb.20054

Bonaccio, M., Di Castelnuovo, A., Costanzo, S., Ruggiero, E., De Curtis, A., Persichillo, M., Tabolacci, C., Facchiano, F., Cerletti, C., Donati, M. B., de Gaetano, G., & Iacoviello, L. (2019). Chili pepper consumption and mortality in Italian adults. Journal of the American College of Cardiology, 74(25), 3139–3149. https://doi.org/10.1016/j.jacc.2019.09.068

Chowdhury, S. P., Hartmann, A., Gao, X., & Borriss, R. (2015). Biocontrol mechanism by root-associated Bacillus amyloliquefaciens FZB42-a review. Frontiers in Microbiology, 6, 780. https://doi.org/10.3389/fmicb.2015.00780

Gabbey, A. E. (2017). Fertilizer and plant food poisoning. Healthline. https://www.healthline.com/health/fertilizers-and-household-plant-foods. [Access online 21 February 2021].

Gururani, M. A., Upadhyaya, C. P., Baskar, V., Venkatesh, J., Nookaraju, A., & Park, S. W. (2013). Plant growth-promoting rhizobacteria enhance abiotic stress tolerance in Solanum tuberosum through inducing changes in the expression of ROS-scavenging enzymes and improved photosynthetic performance. Journal of Plant Growth Regulation, 32(2), 245-258. https://doi.org/10.1007/s00344-012-9292-6

Innes, R. (2013). Economics of agricultural residuals and overfertilization: Chemical fertilizer use, livestock waste, manure management, and environmental impacts. Encyclopedia of Energy, Natural Resource, and Environmental Economics, 2013, 50–57. https://doi.org/10.1016/b978-0-12-375067-9.00118-2

Ji, S. H., Gururani, M. A., & Chun, S. C. (2014). Isolation and characterization of plant growth promoting endophytic diazotrophic bacteria from Korean rice cultivars. Microbiological Research, 169(1), 83–98. https://doi.org/10.1016/j.micres.2013.06.003

Korejo, F., Ali, S. A., Humayun, F., Rahman, A., Sultana, V., Ara, J., & Ehteshamul-Haque, S. (2019). Management of root rotting fungi and root knot nematode with endophytic fluorescent Pseudomonas associated with Salvadora species. Pakistan Journal of Botany, 51(4), 1507-1516. http://doi.org/10.30848/PJB2019-4(19)

Kushwaha, A., Baily, S. B., Maxton, A., & Ram, G. D. (2013). Isolation and characterization of PGPR associated with cauliflower roots and its effect on plant growth. The Bioscan, 8(1), 95-99.

Martinez, R. (2013). Bacillus subtilis. In Brenner's Encyclopedia of Genetics (2nd Edition). Academic Press. pp. 246–248. https://doi.org/10.1016/b978-0-12-374984-0.00125-x

More, H. (2020). Biofertilizers, biocontrol agents, biodegradable plastics, eatable vaccines. The Fact Factor. https://thefactfactor.com/facts/pure_science/biology/general-biology/biofertilizers-and-biocontrol-agents/9751/. [Access online 8 March 2020].

Nehra, V., Saharan, B.S., & Choudhary, M., (2016). Evaluation of Brevibacillus brevis as a potential plant growth promoting rhizobacteria for cotton (Gossypium hirsutum) crop. SpringerPlus, 5(1), 948.

Ngalimat, M. S., Mohd Hata, E., Zulperi, D., Ismail, S. I., Ismail, M. R., Mohd Zainudin, N. A. I., Saidi, N. B., & Yusof, M. T. (2021). Plant growth-promoting bacteria as an emerging tool to manage bacterial rice pathogens. Microorganisms, 9(4), 682. https://doi.org/10.3390/microorganisms9040682

Niazi, A., Manzoor, S., Asari, S., Bejai, S., Meijer, J., & Bongcam-Rudloff, E. (2014). Genome analysis of Bacillus amyloliquefaciens subsp. plantarum UCMB5113: A rhizobacterium that improves plant growth and stress management. PLoS One, 9(8), e104651.

Saharan, B. S., & Nehra, V. (2011). Plant growth promoting rhizobacteria: A critical review. Life Sci Med Res, 21(1), 30.

Savci, S. (2012). Investigation of the effect of chemical fertilizers on environment. Apcbee Procedia, 1, 287-292. https://doi.org/10.1016/j.apcbee.2012.03.047

Sgroy, V., Cassán, F., Masciarelli, O., del Papa, M. F., Lagares, A., & Luna, V. (2009). Isolation and characterization of endophytic plant growth-promoting (PGPB) or stress homeostasis-regulating (PSHB) bacteria associated to the halophyte Prosopis strombulifera. Applied Microbiology and Biotechnology, 85(2), 371–381. https://doi.org/10.1007/s00253-009-2116-3

Shankar, T., Pavaraj, M., Umamaheswari, K., Prabhu, D., & Baskaran, S. (2011). Effect of Pseudomonas aeruginosa on the root-knot nematode, Meloidogyne incognita infecting tomato, Lycopersicum esculentum. Academic Journal of Entomology, 4(3), 114-117.

Stefan, M., Mihasan, M., & Dunca, S. (2008). Plant growth promoting rhizobacteria can inhibit the in vitro germination of Glycine max L. seeds. Journal of Experimental and Molecular Biology, 9(3).

Tank, N., & Saraf, M. (2010). Salinity-resistant plant growth promoting rhizobacteria ameliorates sodium chloride stress on tomato plants. Journal of Plant Interactions, 5(1), 51-58.

Tankeshwar, A. (2021). Colony morphology of bacteria. Microbe Online. https://microbeonline.com/colony-morphology-bacteria-describe-bacterial-colonies/. [Access online 30 May 2021].

Veselova, S. V., Sorokan, A. V., Burkhanova, G. F., Rumyantsev, S. D., Cherepanova, E. A., Alekseev, V. Y., Sarvarova, E. R., Kasimova, A. R., & Maksimov, I. V. (2022). By modulating the hormonal balance and ribonuclease activity of tomato plants Bacillus subtilis induces defense response against potato virus X and potato virus Y. Biomolecules, 12(2), 288. https://doi.org/10.3390/biom12020288

Walker, T. S., Bais, H. P., Déziel, E., Schweizer, H. P., Rahme, L. G., Fall, R., & Vivanco, J. M. (2004). Pseudomonas aeruginosa-Plant root interactions. Pathogenicity, biofilm formation, and root exudation. Plant Physiology, 134(1), 320–331. https://doi.org/10.1104/pp.103.027888

Yousaf, M., Li, J., Lu, J., Ren, T., Cong, R., Fahad, S., & Li, X. (2017). Effects of fertilization on crop production and nutrient-supplying capacity under rice-oilseed rape rotation system. Scientific Reports, 7(1), 1-9. https://doi.org/10.1038/s41598-017-01412-0

Downloads

Published

2022-04-30

Issue

Section

Archives